Ошибка при установке XTS пакет на R

я получил следующие ошибки из пакета XTS при попытке установить пакет quantmod:Ошибка при установке XTS пакет на R

> install.packages("quantmod", repos="http://R-Forge.R-project.org", type="source") 
also installing the dependencies ‘xts’, ‘TTR’ 

пробую URL 'http://R-Forge.R-project.org/src/contrib/xts_0.9.874.tar.gz' 
Content type 'application/x-gzip' length 538182 bytes (525 KB) 
================================================== 
downloaded 525 KB 

пробую URL 'http://R-Forge.R-project.org/src/contrib/TTR_0.22-0.1.tar.gz' 
Content type 'application/x-gzip' length 276426 bytes (269 KB) 
================================================== 
downloaded 269 KB 

пробую URL 'http://R-Forge.R-project.org/src/contrib/quantmod_0.4-3.tar.gz' 
Content type 'application/x-gzip' length 123464 bytes (120 KB) 
================================================== 
downloaded 120 KB 

* installing *source* package ‘xts’ ... 
** libs 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c add_class.c -o add_class.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c any.c -o any.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c attr.c -o attr.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c binsearch.c -o binsearch.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c coredata.c -o coredata.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c diff.c -o diff.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c dimnames.c -o dimnames.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c endpoints.c -o endpoints.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c extract_col.c -o extract_col.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c init.c -o init.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c isOrdered.c -o isOrdered.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c isXts.c -o isXts.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c leadingNA.c -o leadingNA.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c merge.c -o merge.o 
/usr/local/bin/gfortran -fPIC -g -O2 -c period.max.f -o period.max.o 
/usr/local/bin/gfortran -fPIC -g -O2 -c period.min.f -o period.min.o 
/usr/local/bin/gfortran -fPIC -g -O2 -c period.prod.f -o period.prod.o 
/usr/local/bin/gfortran -fPIC -g -O2 -c period.sum.f -o period.sum.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c rbind.c -o rbind.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c rollfun.c -o rollfun.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c runSum.c -o runSum.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c startofyear.c -o startofyear.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c subset.c -o subset.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c subset.old.c -o subset.old.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c toperiod.c -o toperiod.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c totalcols.c -o totalcols.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c tryXts.c -o tryXts.o 
clang -I/usr/local/Cellar/r/3.2.1/R.framework/Resources/include -DNDEBUG -I/usr/local/opt/gettext/include -I/usr/local/opt/readline/include -I"/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/zoo/include" -fPIC -g -O2 -c unique.time.c -o unique.time.o 
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/Cellar/r/3.2.1/R.framework/Resources/lib -L/usr/local/opt/gettext/lib -L/usr/local/opt/readline/lib -o xts.so add_class.o any.o attr.o binsearch.o coredata.o diff.o dimnames.o endpoints.o extract_col.o init.o isOrdered.o isXts.o leadingNA.o merge.o period.max.o period.min.o period.prod.o period.sum.o rbind.o rollfun.o runSum.o startofyear.o subset.o subset.old.o toperiod.o totalcols.o tryXts.o unique.time.o -L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5/gcc/x86_64-apple-darwin14.3.0/5.1.0 -L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5 -lgfortran -lquadmath -lm -F/usr/local/Cellar/r/3.2.1/R.framework/.. -framework R -lintl -Wl,-framework -Wl,CoreFoundation 
ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5/gcc/x86_64-apple-darwin14.3.0/5.1.0' 
ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5' 
ld: library not found for -lgfortran 
clang: error: linker command failed with exit code 1 (use -v to see invocation) 
make: *** [xts.so] Error 1 
ERROR: compilation failed for package ‘xts’ 
* removing ‘/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/xts’ 
ERROR: dependency ‘xts’ is not available for package ‘TTR’ 
* removing ‘/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/TTR’ 
ERROR: dependencies ‘xts’, ‘TTR’ are not available for package ‘quantmod’ 
* removing ‘/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/quantmod’

Я получил НКУ установлено:

$ gcc -v 
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 
Apple LLVM version 6.1.0 (clang-602.0.53) (based on LLVM 3.6.0svn) 
Target: x86_64-apple-darwin14.5.0 
Thread model: posix

И я у вас установлен gfortran:

$ gfortran -v 
Using built-in specs. 
COLLECT_GCC=gfortran 
COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper 
Target: x86_64-apple-darwin14.4.0 
Configured with: ../configure --build=x86_64-apple-darwin14.4.0 --prefix=/usr/local/Cellar/gcc/5.2.0 --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.2.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --enable-multilib 
Thread model: posix 
gcc version 5.2.0 (Homebrew gcc 5.2.0)

Похоже, что ошибка происходит из-за неправильного пути. Там нет /usr/local/Cellar/gcc/5.1.0/ на моем компьютере, только /usr/local/Cellar/gcc/5.2.0/:

ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5/gcc/x86_64-apple-darwin14.3.0/5.1.0' 
    ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5' 
    ld: library not found for -lgfortran

sessionInfo():

> sessionInfo() 
R version 3.2.1 (2015-06-18) 
Platform: x86_64-apple-darwin14.3.0 (64-bit) 
Running under: OS X 10.10.5 (Yosemite) 

locale: 
[1] ru_RU.UTF-8/ru_RU.UTF-8/ru_RU.UTF-8/C/ru_RU.UTF-8/ru_RU.UTF-8 

attached base packages: 
[1] stats  graphics grDevices utils  datasets methods base 

loaded via a namespace (and not attached): 
[1] tools_3.2.1

Как я мог это исправить?

UPDATE:

Я также попытался решение от Errors installing RForge version of xts package for R on OSX

установить fotran компилятор из CRAN https://cran.r-project.org/bin/macosx/tools/
перспективе R CMD INSTALL xts_0.9.874.tar.gz.

Нет у меня:

... 
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/Cellar/r/3.2.1/R.framework/Resources/lib -L/usr/local/opt/gettext/lib -L/usr/local/opt/readline/lib -o xts.so add_class.o any.o attr.o binsearch.o coredata.o diff.o dimnames.o endpoints.o extract_col.o init.o isOrdered.o isXts.o leadingNA.o merge.o period.max.o period.min.o period.prod.o period.sum.o rbind.o rollfun.o runSum.o startofyear.o subset.o subset.old.o toperiod.o totalcols.o tryXts.o unique.time.o -L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5/gcc/x86_64-apple-darwin14.3.0/5.1.0 -L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5 -lgfortran -lquadmath -lm -F/usr/local/Cellar/r/3.2.1/R.framework/.. -framework R -lintl -Wl,-framework -Wl,CoreFoundation 
ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5/gcc/x86_64-apple-darwin14.3.0/5.1.0' 
ld: warning: directory not found for option '-L/usr/local/Cellar/gcc/5.1.0/lib/gcc/5' 
ld: library not found for -lquadmath 
clang: error: linker command failed with exit code 1 (use -v to see invocation) 
make: *** [xts.so] Error 1 
ERROR: compilation failed for package ‘xts’ 
* removing ‘/usr/local/Cellar/r/3.2.1/R.framework/Versions/3.2/Resources/library/xts’

источник

2015-09-09 pupadupa

Это скорее 'xts', а не' quantmod', что зависит от него. Проводка 'sessionInfo()' может быть полезна. Попробуйте установить 'xts' по отдельности, может помочь сузить его. – tonytonov

Связанный: http://stackoverflow.com/questions/5073154/errors-installing-rforge-version-of-xts-package-for-r-on-osx – tonytonov

@tonytonov Я добавляю sessionInfo() и некоторое обновление – pupadupa

Наконец нашел решение здесь: http://thecoatlessprofessor.com/programming/rcpp-rcpparmadillo-and-os-x-mavericks-lgfortran-and-lquadmath-error/

Здесь:

Скачать gfortran-4.8.2-darwin13.tar.bz2 пакет из http://r.research.att.com/libs/
Распакуйте в ~/путем запуска sudo tar fvxz gfortran-4.8.2-darwin13.tar.bz2 -C /

После этого я бег

R CMD INSTALL xts_0.9.874.tar.gz

и XTS, установленный без ошибок (BTW, я dowloaded последнего xts_0.9.874.tar.gz от https://cran.r-project.org/bin/macosx/tools/).
После этого квант установлен без ошибок. С помощью этой команды:

install.packages("quantmod", repos="http://R-Forge.R-project.org", type="source")

источник

2015-09-09 15:04:03 pupadupa

Ошибка при установке XTS пакет на R

ответ

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