2014-09-03 4 views
3

Я получаю следующую ошибку, когда пытаюсь установить пакет plyr, я пробовал некоторые из предлагаемых решений в других потоках, но они, похоже, не работают. Я недавно обновили версию R и R студии на сервереОШИБКА: компиляция завершилась неудачно для пакета 'Rcpp'

> install.packages("plyr") 
Installing package into ‘/home/arsvis5/R/x86_64-redhat-linux-gnu-library/2.15’ 
(as ‘lib’ is unspecified) 
also installing the dependency ‘Rcpp’ 

trying URL 'http://cran.rstudio.com/src/contrib/Rcpp_0.11.2.tar.gz' 
Content type 'application/x-gzip' length 2004313 bytes (1.9 Mb) 
opened URL 
================================================== 
downloaded 1.9 Mb 

trying URL 'http://cran.rstudio.com/src/contrib/plyr_1.8.1.tar.gz' 
Content type 'application/x-gzip' length 393233 bytes (384 Kb) 
opened URL 
================================================== 
downloaded 384 Kb 

* installing *source* package ‘Rcpp’ ... 
** package ‘Rcpp’ successfully unpacked and MD5 sums checked 
** libs 
g++ -m64 -I/usr/include/R -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c Date.cpp -o Date.o 
../inst/include/Rcpp/Date.h: In member function ‘void Rcpp::Date::update_tm()’: 
../inst/include/Rcpp/Date.h:108: warning: converting to ‘time_t’ from ‘double’ 
../inst/include/Rcpp/Date.h: In function ‘Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)’: 
../inst/include/Rcpp/Date.h:139: warning: converting to ‘time_t’ from ‘double’ 
Date.cpp: In function ‘double Rcpp::mktime00(tm&)’: 
Date.cpp:57: warning: converting to ‘int’ from ‘double’ 
Date.cpp:60: warning: converting to ‘int’ from ‘double’ 
Date.cpp: In function ‘tm* Rcpp::timesub(const time_t*, long int, const Rcpp::state*, tm*)’: 
Date.cpp:1196: warning: converting to ‘long int’ from ‘double’ 
g++ -m64 -I/usr/include/R -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c Module.cpp -o Module.o 
../inst/include/Rcpp/Date.h: In member function ‘void Rcpp::Date::update_tm()’: 
../inst/include/Rcpp/Date.h:108: warning: converting to ‘time_t’ from ‘double’ 
../inst/include/Rcpp/Date.h: In function ‘Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)’: 
../inst/include/Rcpp/Date.h:139: warning: converting to ‘time_t’ from ‘double’ 
g++ -m64 -I/usr/include/R -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c Rcpp_init.cpp -o Rcpp_init.o 
../inst/include/Rcpp/Date.h: In member function ‘void Rcpp::Date::update_tm()’: 
../inst/include/Rcpp/Date.h:108: warning: converting to ‘time_t’ from ‘double’ 
../inst/include/Rcpp/Date.h: In function ‘Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)’: 
../inst/include/Rcpp/Date.h:139: warning: converting to ‘time_t’ from ‘double’ 
g++ -m64 -I/usr/include/R -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c api.cpp -o api.o 
../inst/include/Rcpp/Date.h: In member function ‘void Rcpp::Date::update_tm()’: 
../inst/include/Rcpp/Date.h:108: warning: converting to ‘time_t’ from ‘double’ 
../inst/include/Rcpp/Date.h: In function ‘Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)’: 
../inst/include/Rcpp/Date.h:139: warning: converting to ‘time_t’ from ‘double’ 
g++ -m64 -I/usr/include/R -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c attributes.cpp -o attributes.o 
../inst/include/Rcpp/Date.h: In member function ‘void Rcpp::Date::update_tm()’: 
../inst/include/Rcpp/Date.h:108: warning: converting to ‘time_t’ from ‘double’ 
../inst/include/Rcpp/Date.h: In function ‘Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)’: 
../inst/include/Rcpp/Date.h:139: warning: converting to ‘time_t’ from ‘double’ 
{standard input}: Assembler messages: 
{standard input}:87953: Warning: end of file not at end of a line; newline inserted 
{standard input}:89432: Error: undefined symbol `.LLSDATT10675' in operation 
{standard input}:89435: Error: undefined symbol `.LLSDACSE10675' in operation 
g++: Internal error: Killed (program cc1plus) 
Please submit a full bug report. 
See <URL:http://bugzilla.redhat.com/bugzilla> for instructions. 
make: *** [attributes.o] Error 1 
ERROR: compilation failed for package ‘Rcpp’ 
* removing ‘/home/arsvis5/R/x86_64-redhat-linux-gnu-library/2.15/Rcpp’ 
Warning in install.packages : 
    installation of package ‘Rcpp’ had non-zero exit status 
ERROR: dependency ‘Rcpp’ is not available for package ‘plyr’ 
* removing ‘/home/arsvis5/R/x86_64-redhat-linux-gnu-library/2.15/plyr’ 
Warning in install.packages : 
    installation of package ‘plyr’ had non-zero exit status 


> sessionInfo() 
R version 3.1.0 (2014-04-10) 
Platform: x86_64-redhat-linux-gnu (64-bit) 

locale: 
[1] LC_CTYPE=en_US.UTF-8  LC_NUMERIC=C    LC_TIME=en_US.UTF-8  
[4] LC_COLLATE=en_US.UTF-8  LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 
[7] LC_PAPER=en_US.UTF-8  LC_NAME=C     LC_ADDRESS=C    
[10] LC_TELEPHONE=C    LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C  

attached base packages: 
[1] stats  graphics grDevices utils  datasets methods base  

other attached packages: 
[1] codetools_0.2-9 RMySQL_0.9-3 DBI_0.3.0  

loaded via a namespace (and not attached): 
[1] tools_3.1.0 
+0

Попробуйте установить только Rcpp. Какие другие предложения вы попробовали (дайте понять или укажите ссылки). Отправьте свой 'sessionInfo()' или, по крайней мере, включите версию вашей ОС, версию R/Rstudio – MrFlick

+0

Я попытался просто установить Rcpp, получил эту ошибку {стандартный ввод}: 78314: Ошибка: ожидаемая запятая после имени '_ZN4Rcpp10attributes26SourceFileAttributesParser14parseArgumentsERKS 'в директиве .size g ++: Внутренняя ошибка: убит (программа cc1plus) Просьба представить полный отчет об ошибке. Добавлена ​​информация об изображении выше в описании вопроса – user3641528

ответ

3

Проблема была решена после обновления оперативной памяти на моем сервере, пакет не был установкой, потому что не хватает памяти на сервере.

+0

Да, то же самое здесь. – leventunver