Ошибка установки пакета R atSNP

Question

Я пытаюсь установить пакет R atSNP от https://github.com/chandlerzuo/atSNP. Согласно документации, это то, как он установлен:

> library(devtools) 
> install_github("chandlerzuo/atSNP") 

Но я получаю следующее сообщение об ошибке:

Downloading github repo chandlerzuo/atSNP@master 
Installing atSNP 
Skipping 2 packages not available: GenomicRanges, motifStack 
'/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore CMD INSTALL \ 
    '/private/var/folders/vt/nnrr0hts2h1bk6stsg4mt2xw0000gn/T/Rtmpzjo43z/devtoolsd9a33b03bdb4/chandlerzuo-atSNP-8cbe50e' \ 
    --library='/Library/Frameworks/R.framework/Versions/3.2/Resources/library' --install-tests 

* installing *source* package ‘atSNP’ ... 
** libs 
make: Nothing to be done for `all'. 
installing to /Library/Frameworks/R.framework/Versions/3.2/Resources/library/atSNP/libs 
** R 
** data 
** tests 
** preparing package for lazy loading 
No methods found in "IRanges" for requests: sapply 
** help 
*** installing help indices 
** building package indices 
** installing vignettes 
** testing if installed package can be loaded 
No methods found in "IRanges" for requests: sapply 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/atSNP/libs/atSNP.so': 
    dlopen(/Library/Frameworks/R.framework/Versions/3.2/Resources/library/atSNP/libs/atSNP.so, 6): no suitable image found. Did find: 
    /Library/Frameworks/R.framework/Versions/3.2/Resources/library/atSNP/libs/atSNP.so: unknown file type, first eight bytes: 0x7F 0x45 0x4C 0x46 0x02 0x01 0x01 0x00 
Error: loading failed 
Execution halted 
ERROR: loading failed 
* removing ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/atSNP’ 
Error: Command failed (1) 

Это информация сессии:

> sessionInfo() 
R version 3.2.0 (2015-04-16) 
Platform: x86_64-apple-darwin13.4.0 (64-bit) 
Running under: OS X 10.10 (Yosemite) 

locale: 
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 

attached base packages: 
[1] grid  stats4 parallel stats  graphics grDevices utils  datasets methods base  

other attached packages: 
[1] motifStack_1.12.0 Biostrings_2.36.1 XVector_0.8.0  ade4_1.7-2   MotIV_1.24.0   grImport_0.9-0  
[7] XML_3.98-1.2   GenomicRanges_1.20.4 GenomeInfoDb_1.4.0 IRanges_2.2.2  S4Vectors_0.6.0  BiocGenerics_0.14.0 
[13] devtools_1.8.0  

loaded via a namespace (and not attached): 
[1] magrittr_1.5   GenomicAlignments_1.4.1 zlibbioc_1.14.0   BiocParallel_1.2.2  BSgenome_1.36.0   
[6] lattice_0.20-31   stringr_1.0.0   httr_0.6.1    tools_3.2.0    seqLogo_1.34.0   
[11] lambda.r_1.1.7   futile.logger_1.4.1  git2r_0.10.1   rversions_1.0.0   digest_0.6.8   
[16] rtracklayer_1.28.4  futile.options_1.0.0 bitops_1.0-6   RCurl_1.95-4.6   memoise_0.2.1   
[21] rGADEM_2.16.0   stringi_0.4-1   Rsamtools_1.20.4 

Как вы можете видеть , Я установил & прилагается оба пакета GenomicRanges & motifStack и все еще сообщение об установке говорит, что они недоступны. Я попытался удалить &, переустановив оба пакета, но я все равно получаю ту же ошибку. Любые предложения будут оценены.

UPDATE: Я последовал предложение ниже, и по-прежнему получать следующие ошибки:

* installing to library ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library’ 
* installing *source* package ‘atSNP’ ... 
** libs 
make: Nothing to be done for `all'. 
installing to /Library/Frameworks/R.framework/Versions/3.2/Resources/library/atSNP/libs 
** R 
** data 
** preparing package for lazy loading 
No methods found in "IRanges" for requests: sapply 
** help 
*** installing help indices 
** building package indices 
** installing vignettes 
** testing if installed package can be loaded 
No methods found in "IRanges" for requests: sapply 
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
    unable to load shared object '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/atSNP/libs/atSNP.so': 
    dlopen(/Library/Frameworks/R.framework/Versions/3.2/Resources/library/atSNP/libs/atSNP.so, 6): no suitable image found. Did find: 
    /Library/Frameworks/R.framework/Versions/3.2/Resources/library/atSNP/libs/atSNP.so: unknown file type, first eight bytes: 0x7F 0x45 0x4C 0x46 0x02 0x01 0x01 0x00 
Error: loading failed 
Execution halted 
ERROR: loading failed 
* removing ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library/atSNP’ 

Благодарности

Answer 1

Вы можете загрузить исходный пакет с веб-сайта GitHub и установить его. Это не дает никаких ошибок на моем Mac. В терминале типа

git clone git://github.com/chandlerzuo/atSNP.git

R CMD INSTALL atSNP