0
После входа в наш сервер с bash, я пытаюсь переключиться на csh, но он застрял там. Интересно, что происходит при запуске csh?csh не может быть запущен
У меня нет файла .cshrc. Я уверен, что это связано с некоторыми настройками, характерными для моей учетной записи, потому что другой пользователь может использовать csh без проблем. Я попытался удалить мои .bash_profile и .bashrc и скопировать их из указанной выше учетной записи, но они не сработали.
обновление: 25 ноября, 2014 15:31 PM
Спасибо за все комментарии, особенно за упоминание 'CSH -X'. Прежде всего позвольте мне прояснить несколько вещей:
- от «застрял» Я имею в виду не появляется командная строка после того как я типа
csh - Я проверил
topпослеcsh, CSH находится в состоянии «S», так что это не зацикливание бесконечно - `csh` действительно символическая ссылка на` tcsh` типа
- «х» или введите после зависания «CSH» не изменит ситуацию
Вот что я получил после типа csh -X, любой ключ?
[[email protected] ~]$ csh -X
if (547 > 199 && `id -gn` == `id -un`) then
id -gn
id -un
umask 022
endif
if (1) then
if (1) then
set promptchars=$#
set prompt=[%[email protected]%m %c]%#
set autolist
else
endif
if (1) then
bindkey ^[[3~ delete-char
endif
bindkey ^R i-search-back
set echo_style = both
set histdup = erase
set savehist = (1024 merge)
if (1) then
if (1) then
switch (xterm)
if (1) then
set prompt=%{\033]0;%[email protected]%m:%c\007%}[%[email protected]%m %c]%#
endif
breaksw
endif
endif
setenv MAIL /var/spool/mail/user
if (! 0) then
if (-d /etc/profile.d) then
set nonomatch
foreach i (/etc/profile.d/*.csh)
if (-r /etc/profile.d/apache-ant.csh) then
if (1) then
source /etc/profile.d/apache-ant.csh
setenv ANT_HOME /opt/rocks
else
endif
end
if (-r /etc/profile.d/colorls.csh) then
if (1) then
source /etc/profile.d/colorls.csh
if (0) then
alias ll ls -l
alias l. ls -d .*
set COLORS=/etc/DIR_COLORS
if (1) then
if (-e /etc/DIR_COLORS.xterm) then
if (-e /etc/DIR_COLORS.256color) then
if (`tput colors` == 256) then
tput colors
endif
endif
if (-f ~/.dircolors) set COLORS=~/.dircolors
if (-f ~/.dir_colors) set COLORS=~/.dir_colors
if (1) then
if (-f ~/.dircolors.xterm) set COLORS=~/.dircolors.xterm
if (-f ~/.dir_colors.xterm) set COLORS=~/.dir_colors.xterm
endif
if (! -e /etc/DIR_COLORS) exit
eval `dircolors -c /etc/DIR_COLORS`
dircolors -c /etc/DIR_COLORS
setenv LS_COLORS rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
if (rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36: == ) exit
set color_none=`sed -n '/^COLOR.*none/Ip' < $COLORS`
sed -n /^COLOR.*none/Ip
if ( != ) then
unset color_none
finish:
alias ll ls -l --color=auto
alias l. ls -d .* --color=auto
alias ls ls --color=auto
else
endif
end
if (-r /etc/profile.d/cvs.csh) then
if (1) then
source /etc/profile.d/cvs.csh
else
endif
end
if (-r /etc/profile.d/eclipse.csh) then
if (1) then
source /etc/profile.d/eclipse.csh
setenv ECLIPSE_HOME /opt/eclipse
set BIN=/opt/eclipse
if (-d /opt/eclipse) then
echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
/bin/grep -q /opt/eclipse
if (0 != 0) then
endif
else
endif
end
if (-r /etc/profile.d/ganglia-binaries.csh) then
if (1) then
source /etc/profile.d/ganglia-binaries.csh
set GANGLIA_HOME=/opt/ganglia
set BIN=/opt/ganglia/bin
set SBIN=/opt/ganglia/sbin
if (-d /opt/ganglia/bin) then
echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
/bin/grep -q /opt/ganglia/bin
if (0 != 0) then
endif
if (-d /opt/ganglia/sbin) then
echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
/bin/grep -q /opt/ganglia/sbin
if (0 != 0) then
endif
else
endif
end
if (-r /etc/profile.d/glib2.csh) then
if (1) then
source /etc/profile.d/glib2.csh
setenv G_BROKEN_FILENAMES 1
else
endif
end
if (-r /etc/profile.d/gnome-ssh-askpass.csh) then
if (1) then
source /etc/profile.d/gnome-ssh-askpass.csh
setenv SSH_ASKPASS /usr/libexec/openssh/gnome-ssh-askpass
else
endif
end
if (-r /etc/profile.d/java.csh) then
if (1) then
source /etc/profile.d/java.csh
setenv JAVA_HOME /usr/java/latest
set BIN=/usr/java/latest/bin
if (-d /usr/java/latest/bin) then
echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
/bin/grep -q /usr/java/latest/bin
if (0 != 0) then
endif
else
endif
end
if (-r /etc/profile.d/lang.csh) then
if (1) then
source /etc/profile.d/lang.csh
set sourced=0
if (1) then
set saved_lang=en_US.iso885915
if (-f /home/user/.i18n) then
setenv LANG en_US.iso885915
unset saved_lang
else
if (0 == 1) then
else
endif
end
if (-r /etc/profile.d/less.csh) then
if (1) then
source /etc/profile.d/less.csh
if (-x /usr/bin/lesspipe.sh) then
setenv LESSOPEN |/usr/bin/lesspipe.sh %s
endif
else
endif
end
if (-r /etc/profile.d/maven.csh) then
if (1) then
source /etc/profile.d/maven.csh
setenv MAVEN_HOME /opt/maven
set BIN=/opt/maven/bin
if (-d /opt/maven/bin) then
echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
/bin/grep -q /opt/maven/bin
if (0 != 0) then
endif
else
endif
end
if (-r /etc/profile.d/modules.csh) then
if (1) then
source /etc/profile.d/modules.csh
if (1) then
set modules_shell=tcsh
else
set exec_prefix=/usr/bin
set prefix=
set postfix=
if (0) then
set histchar = !
endif
if (1) then
set prefix = set _prompt="$prompt";set prompt="";
set postfix = set prompt="$_prompt";unset _prompt;
endif
if (0) then
set postfix = set _exit=$status; set prompt="$_prompt";unset _prompt;; test 0 = $_exit;
alias module set _prompt="$prompt";set prompt="";eval `/usr/bin/modulecmd tcsh !*`; set _exit=$status; set prompt="$_prompt";unset _prompt;; test 0 = $_exit;
unset exec_prefix
unset prefix
unset postfix
setenv MODULESHOME /usr/share/Modules
if (! 1) then
if (! 1) then
else
endif
end
if (-r /etc/profile.d/pdsh.csh) then
if (1) then
source /etc/profile.d/pdsh.csh
set PDSHROOT=/opt/pdsh
set BIN=/opt/pdsh/bin
if (-d /opt/pdsh/bin) then
echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
/bin/grep -q /opt/pdsh/bin
if (0 != 0) then
endif
else
endif
end
if (-r /etc/profile.d/qt.csh) then
if (1) then
source /etc/profile.d/qt.csh
if (1) then
exit
else
endif
end
if (-r /etc/profile.d/rocks-binaries.csh) then
if (1) then
source /etc/profile.d/rocks-binaries.csh
setenv ROCKS_ROOT /opt/rocks
set BIN=/opt/rocks/bin
set SBIN=/opt/rocks/bin
if (-d /opt/rocks/bin) then
echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
/bin/grep -q /opt/rocks/bin
if (0 != 0) then
endif
if (-d /opt/rocks/bin) then
echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
/bin/grep -q /opt/rocks/bin
if (0 != 0) then
endif
else
endif
end
if (-r /etc/profile.d/rocks-devel.csh) then
if (1) then
source /etc/profile.d/rocks-devel.csh
setenv ROCKSROOT /opt/rocks/share/devel
setenv ROLLSROOT /opt/rocks/share/devel/src/roll
else
endif
end
if (-r /etc/profile.d/rocks-hpc.csh) then
if (1) then
source /etc/profile.d/rocks-hpc.csh
if (! 0) then
set _prompt=%{\033]0;%[email protected]%m:%c\007%}[%[email protected]%m %c]%#
set prompt=
eval `/usr/bin/modulecmd tcsh -s add rocks-openmpi`
/usr/bin/modulecmd tcsh -s add rocks-openmpi
set _exit=0
set prompt=%{\033]0;%[email protected]%m:%c\007%}[%[email protected]%m %c]%#
unset _prompt
test 0 = 0
endif
else
endif
end
if (-r /etc/profile.d/rocks-lang.csh) then
if (1) then
source /etc/profile.d/rocks-lang.csh
if (1) then
if (xterm == linux) then
endif
else
endif
end
if (-r /etc/profile.d/sge-binaries.csh) then
if (1) then
source /etc/profile.d/sge-binaries.csh
setenv SGE_ROOT /opt/gridengine
setenv SGE_ARCH `$SGE_ROOT/util/arch`
/opt/gridengine/util/arch
set DEFAULTMANPATH = `$SGE_ROOT/util/arch -m`
/opt/gridengine/util/arch -m
set MANTYPE = `$SGE_ROOT/util/arch -mt`
/opt/gridengine/util/arch -mt
setenv SGE_CELL default
setenv SGE_QMASTER_PORT 536
setenv SGE_EXECD_PORT 537
set BIN=/opt/gridengine/bin/linux-x64
if (-d /opt/gridengine/bin/linux-x64) then
echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
/bin/grep -q /opt/gridengine/bin/linux-x64
if (0 != 0) then
endif
set shlib_path_name = `$SGE_ROOT/util/arch -lib`
/opt/gridengine/util/arch -lib
if (`eval echo '$?'$shlib_path_name`) then
eval echo $?LD_LIBRARY_PATH
echo 1
set old_value = `eval echo '$'$shlib_path_name`
eval echo $LD_LIBRARY_PATH
echo /opt/gridengine/lib/linux-x64:/opt/openmpi/lib
setenv LD_LIBRARY_PATH /opt/gridengine/lib/linux-x64:/opt/gridengine/lib/linux-x64:/opt/openmpi/lib
else
unset DEFAULTMANPATH MANTYPE shlib_path_name
else
endif
end
if (-r /etc/profile.d/sge-mpi.csh) then
if (1) then
source /etc/profile.d/sge-mpi.csh
setenv MPICH_PROCESS_GROUP no
else
endif
end
if (-r /etc/profile.d/ssh-key.csh) then
if (1) then
source /etc/profile.d/ssh-key.csh
/bin/bash /etc/profile.d/ssh-key.sh
else
endif
end
if (-r /etc/profile.d/vim.csh) then
if (1) then
source /etc/profile.d/vim.csh
if (-x /usr/bin/id) then
if (`/usr/bin/id -u` > 200) then
/usr/bin/id -u
alias vi vim
endif
endif
else
endif
end
unset i nonomatch
endif
endif
Ваши сценарии запуска bash не имеют ничего общего с запуском csh (если вы не ошибочно не отправляете их из .profile или аналогичного). Предполагается, что этот сниппет покажет отсутствие подсказки csh? Удаляет ли 'ctrl-c' возврат к подсказке bash? –
Что именно вы имеете в виду, когда говорите, что вы «застряли»? –
Спасибо. 'ctrl-c' возвращает меня к bash. – Youngman